| Title: | Histone ChIP-Seq qPCR Analyzer |
|---|---|
| Description: | Quality control of chromatin immunoprecipitation libraries (ChIP-seq) by quantitative polymerase chain reaction (qPCR). This function calculates Enrichment value with respect to reference for each histone modification (specific to 'Vii7' software <http://www.thermofisher.com/ca/en/home/life-science/pcr/real-time-pcr/real-time-pcr-instruments/viia-7-real-time-pcr-system/viia-7-software.html>). This function is applicable to full panel of histone modifications described by International Human Epigenomic Consortium (IHEC). |
| Authors: | Alireza Lorzadeh |
| Maintainer: | Alireza Lorzadeh <[email protected]> |
| License: | MIT + file LICENSE |
| Version: | 1.5 |
| Built: | 2025-02-14 04:41:11 UTC |
| Source: | https://github.com/cran/qcQpcr |
Quality control of chromatin immunoprecipitation libraries (ChIP-seq) by quantitative polymerase chain reaction (qPCR). This function calculates Enrichment value with respect to reference for each histone modification (specific to 'Vii7' software <http://www.thermofisher.com/ca/en/home/life-science/pcr/real-time-pcr/real-time-pcr-instruments/viia-7-real-time-pcr-system/viia-7-software.html>). This function is applicable to full panel of histone modifications described by International Human Epigenomic Consortium (IHEC). Quality control of chromatin immunoprecipitation libraries (ChIP-seq) by quantitative polymerase chain reaction (qPCR). This function calculates Enrichment value with respect to reference for each histone modification (specific to 'Vii7' software <http://www.thermofisher.com/ca/en/home/life-science/pcr/real-time-pcr/real-time-pcr-instruments/viia-7-real-time-pcr-system/viia-7-software.html>). This function is applicable to full panel of histone modifications described by International Human Epigenomic Consortium (IHEC).
The DESCRIPTION file:
| Package: | qcQpcr |
| Type: | Package |
| Title: | Histone ChIP-Seq qPCR Analyzer |
| Version: | 1.5 |
| Date: | 2018-02-02 |
| Author: | Alireza Lorzadeh |
| Maintainer: | Alireza Lorzadeh <[email protected]> |
| Description: | Quality control of chromatin immunoprecipitation libraries (ChIP-seq) by quantitative polymerase chain reaction (qPCR). This function calculates Enrichment value with respect to reference for each histone modification (specific to 'Vii7' software <http://www.thermofisher.com/ca/en/home/life-science/pcr/real-time-pcr/real-time-pcr-instruments/viia-7-real-time-pcr-system/viia-7-software.html>). This function is applicable to full panel of histone modifications described by International Human Epigenomic Consortium (IHEC). |
| Imports: | ggplot2 |
| License: | MIT + file LICENSE |
| Depends: | R (>= 2.10) |
| NeedsCompilation: | no |
| Packaged: | 2018-02-08 18:09:49 UTC; epigenomics_lab_01 |
| Date/Publication: | 2018-02-08 18:44:50 UTC |
| Repository: | https://alorzadeh.r-universe.dev |
| RemoteUrl: | https://github.com/cran/qcQpcr |
| RemoteRef: | HEAD |
| RemoteSha: | c1fe985a1f6f4edf6e90496bff4d6a690c815a87 |
Index of help topics:
SampleTest qPCR ChIP-seq Results
qcQpcr Histone ChIP-Seq qPCR Analyzer
qcQpcr-package Histone ChIP-Seq qPCR Analyzer Histone ChIP-Seq
qPCR Analyzer
qcQpcr(xx,'Title for you graph')
Alireza Lorzadeh
library(ggplot2) data(SampleTest) qcQpcr(SampleTest,'Title for your graph')library(ggplot2) data(SampleTest) qcQpcr(SampleTest,'Title for your graph')
Quality control of chromatin immunoprecipitation libraries (ChIP-seq) by quantitative polymerase chain reaction (qPCR). This function calculates Enrichment value with respect to reference for each histone modification (specific to 'Vii7' software <http://www.thermofisher.com/ca/en/home/life-science/pcr/real-time-pcr/real-time-pcr-instruments/viia-7-real-time-pcr-system/viia-7-software.html>). This function is applicable to full panel of histone modifications described by International Human Epigenomic Consortium (IHEC).
qcQpcr(xx, Name)qcQpcr(xx, Name)
xx |
'Your Data Set' |
Name |
'.... Title for you graph, (ie: Projects name and date)' |
Alireza Lorzadeh
library(ggplot2) data(SampleTest) qcQpcr(SampleTest,'Title for your graph')library(ggplot2) data(SampleTest) qcQpcr(SampleTest,'Title for your graph')
A dataset containing the the CT values of ChIPseq libraries.
SampleTestSampleTest
A data frame with 82 rows and 11 variables
Hirst Lab, UBC Vancouver, Canada